Preprints
Journal Articles
- K Li, JM Gardner, LA Kennedy, J Zhang, JF Sundstrom, SG Oliver, AKY Tam, JEF Green, V Jiranek, BJ Binder, Experimental design and analysis of sulfide-induced invasive growth in wine yeast, Sci. Rep. (2026), DOI: 10.1038/s41598-026-66160-6.
- K Li, AKY Tam, JM Gardner, JF Sundstrom, V Jiranek, JEF Green, BJ Binder and AJ Black, Agent-based modelling and time series inference of filamentous yeast colonies, R. Soc. Open Sci. 13 (2026), 260038, DOI: 10.1098/rsos.260038.
- K Li, AJ Black, T Knežević, JM Gardner, J Zhang, V Jiranek, JEF Green, BJ Binder and AKY Tam, Modelling the emergence of spiral colony morphology in the yeast Magnusiomyces magnusii, ANZIAM J. 68 (2026), e13, DOI: 10.1017/S1446181126100340.
- K Li, S Skivens, JEF Green, AKY Tam, DR Pentland, H Baumann, CW Gourlay, BJ Binder, PP Laissue, A quantitative framework for multiscale analysis of Candida albicans biofilm development, Biofilm 11 (2026), 100356, DOI: 10.1016/j.bioflm.2026.100356.
- AKY Tam, DJ Netherwood, JM Gardner, J Zhang, CW Gourlay, V Jiranek, BJ Binder, JEF Green, Quantifying the effects of cell death and agar density on yeast colony biofilms using an extensional-flow mathematical model, Soft Matter 22 (2026), pp. 2430—2446, DOI: 10.1039/D5SM01051A.
- AKY Tam, A Mogilner, DB Oelz, Non-uniform filament turnover and mechanically-driven contractility and bundle formation in disordered actomyosin networks, Biophys. J. 125 (2026), pp. 1867—1879, DOI: 10.1016/j.bpj.2026.02.032.
- DJ Netherwood, AKY Tam, CW Gourlay, T Knežević, JM Gardner, V Jiranek, BJ Binder and JEF Green, Accidental and regulated cell death in yeast colony biofilms, Bull. Math. Biol. 87 (2025), 110, DOI: 10.1007/s11538-025-01470-w.
- T Miller, AKY Tam, R Marangell, M Wechselberger and BH Bradshaw-Hajek, Shock selection in reaction-diffusion equations with partially negative diffusivity using nonlinear regularisation, Physica D 474 (2025), 134561, DOI: 10.1016/j.physd.2025.134561.
- K Li, JEF Green, H Tronnolone, AKY Tam, AJ Black, JM Gardner, JF Sundstrom, V Jiranek and BJ Binder, An off-lattice discrete model to characterise filamentous yeast colony morphology, PLOS Comput. Biol. 20 (2024), e1012605, DOI: 10.1371/journal.pcbi.1012605.
- MJ Simpson, N Rahman and AKY Tam, Front stability of infinitely steep travelling waves in population biology, J. Phys. A 57 (2024), 315601, DOI: 10.1088/1751-8121/ad6223.
- T Miller, AKY Tam, R Marangell, M Wechselberger and BH Bradshaw-Hajek, Analytic shock-fronted solutions to a reaction—diffusion equation with negative diffusivity, Stud. Appl. Math. 153 (2024), e12685, DOI: 10.1111/sapm.12685.
- MJ Simpson, N Rahman, SW McCue and AKY Tam, Survival, extinction, and interface stability in a two-phase moving boundary model of biological invasion, Physica D 456 (2023), 133912, DOI: 10.1016/j.physd.2023.133912.
- AKY Tam and MJ Simpson, Pattern formation and front stability in a moving-boundary model of biological invasion and recession, Physica D 444 (2023), 133593, DOI: 10.1016/j.physd.2022.133593.
- AKY Tam and MJ Simpson, The effect of geometry on survival and extinction in a moving-boundary model motivated by the Fisher—KPP equation, Physica D 438 (2022), 133305, DOI: 10.1016/j.physd.2022.133305.
- AKY Tam, A Mogilner and DB Oelz, F-actin bending facilitates net actomyosin contraction by inhibiting expansion with plus-end-located myosin motors, J. Math. Biol. 85 (2022), 4, DOI: 10.1007/s00285-022-01737-z.
- AKY Tam, B Harding, JEF Green, S Balasuriya and BJ Binder, Thin-film lubrication model for biofilm expansion under strong adhesion, Phys. Rev. E. 105 (2022), 014408, DOI: 10.1103/PhysRevE.105.014408.
- AKY Tam, A Mogilner and DB Oelz, Protein friction and filament bending facilitate contraction of disordered actomyosin networks, Biophys. J. 120 (2021), 11247, DOI: 10.1016/j.bpj.2021.08.012.
- AKY Tam, JEF Green, S Balasuriya, EL Tek, JM Gardner, JF Sundstrom, V Jiranek and BJ Binder, A thin-film extensional flow model for biofilm expansion by sliding motility, Proc. R. Soc. A 475 (2019), 20190175, DOI: 10.1098/rspa.2019.0175.